The Model Menagerie
This module contains a collection of frequently used parameterizations of disease models.
- vivarium_public_health.disease.models.SI(cause)[source]
Create a Susceptible-Infected disease model.
- Parameters:
cause (
str) – The name of the cause of disease.- Return type:
- Returns:
A configured SI disease model.
- vivarium_public_health.disease.models.SIR(cause)[source]
Create a Susceptible-Infected-Recovered disease model.
- Parameters:
cause (
str) – The name of the cause of disease.- Return type:
- Returns:
A configured SIR disease model.
- vivarium_public_health.disease.models.SIS(cause)[source]
Create a Susceptible-Infected-Susceptible disease model.
- Parameters:
cause (
str) – The name of the cause of disease.- Return type:
- Returns:
A configured SIS disease model.
- vivarium_public_health.disease.models.SIS_fixed_duration(cause, duration)[source]
Create an SIS disease model with a fixed infection duration.
- Parameters:
- Return type:
- Returns:
A configured SIS disease model with fixed duration.
- vivarium_public_health.disease.models.SIR_fixed_duration(cause, duration)[source]
Create an SIR disease model with a fixed infection duration.
- Parameters:
- Return type:
- Returns:
A configured SIR disease model with fixed duration.
- vivarium_public_health.disease.models.NeonatalSWC_without_incidence(cause)[source]
Create a neonatal model with birth prevalence but no incidence.
- Parameters:
cause (
str) – The name of the cause of disease.- Return type:
- Returns:
A configured neonatal disease model without incidence.